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Title: Development of nuclear and plastid SNP markers for genetic studies of Dipteryx tree species in Amazonia
Authors: Honorio Coronado, Eurídice N.
Blanc‑Jolivet, Céline
Mader, Malte
García‑Dávila, Carmen R.
Sebbenn, Alexandre M.
Meyer‑Sand, Barbara R. V.
Paredes‑Villanueva, Kathelyn
Tysklind, Niklas
Troispoux, Valerie
Massot, Marie
Degen, Bernd
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Issue Date: Jan-2019
Publisher: Springer Nature.
Citation: Conservation Genetics Resources volume 11, pages333–336(2019).
Abstract: We developed nuclear and plastid single nucleotide polymorphism (SNP) and insertion/deletion (INDEL) markers for Dipteryx species using a combination of restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing. Of the total 315 loci genotyped using a MassARRAY platform, 292 loci were variable and polymorphic among the 73 sampled individuals from French Guiana, Brasil, Peru, and Bolivia. A final set of 56 nuclear SNPs, 26 chloroplast SNPs, 2 chloroplast INDELs, and 32 mitochondrial SNPs identifying significant population structure was developed. This set of loci will be useful for studies on population genetics of Dipteryx species in Amazonia.
ISSN: 1877-7260
Appears in Collections:Artículos en revistas indexadas

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